PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn127421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 652aa    MW: 73721.8 Da    PI: 6.5138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn127421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21e-115406092795
                 ---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
          B3  27 ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                 +++ + ++ + +ed  ++++W++++ +  ++ks++y+l+ ++ +Fv+angL+egDf+v +  ++ ++++++++
  Achn127421 540 ELEARDGIPIAMEDiGTSQVWNMRYWFwpNNKSRMYLLE-NTGDFVQANGLQEGDFIVMY--SDvKCGKYLIR 609
                 455556677999996777*******55777777777777.*******************9..55599988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0011515614IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15532621IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-13532605IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-8546608IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKGEEYQEIW LERQEQEQDL LDVYEASIFY NDSTGLPDFP RMSSSSSAPA PAKPIASSSP  60
SASSSSSASW AMLKSDAEEY GEKKSISNNN DNRLTPPVAS LSAATSMEVL QPPQSYGDAD  120
CMDMMETFGS MELIESNEIW DPSSIFQTEQ PPQESQHYPQ NGDSFMFEEI NIEMRERERE  180
QNKPPTDELG VLFFEWLKSN KESISAEDMR SIKLRRATVE CASKRLGSTK DGLKQLLKLI  240
LEWVEQYQLQ KKQRLAELNP PFPPPYLEPP LQNPNPNSLP PNINNPCCMP STWVPLPRPP  300
YYPTTAVMAA TPGLYGGDPY GSSVPVPVPN YAQSMEYNML DSSQTWPPSQ YAMSAQYNQF  360
SENNNNNNNR SNNNSIPMVT PLSPAFVGYG NQYQYYQRSG NKLVKLGSSA TKEARKKRMA  420
RQRRFLSHHH HHQHHHHHHN HNQQNQHQNQ NPDRQHHRLG GDQNCLNVGQ ASSANWDYWP  480
NAAALASSNV AVVAVEALQQ PPLVQSQNYQ QQQPQWRVSS DSKVSSDWQR QKEAEIHLPE  540
LEARDGIPIA MEDIGTSQVW NMRYWFWPNN KSRMYLLENT GDFVQANGLQ EGDFIVMYSD  600
VKCGKYLIRG VKVRQPRPKS EAKKPSKSHK NTHTASPSAA SGSSPPPSHR E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085841.11e-164PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLR4TV461e-173R4TV46_POPTO; ABI3
STRINGPOPTR_0002s25330.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-46B3 family protein